Useful Publications and Websites for Deep Sequencing Data Analysis
...ilities for comparing genomic features. Quinlan and Hall, Bioinfor...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubM...ent de novo assembly of large genomes using compressed data struct...ty of California - Santa Cruz Genome Browser is on the FAQ list A...3789 days ago
Bioinformatics infrastructure speed up Indian agriculture
"Realizing the paradigm shift it can bring about, the government is focusing on increase...sense out of huge genomic" - http://www.biospectrumindia.com/biospecindia/features/203849/supercomputing-indian-...3719 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form...information about biological sequences collected from the environment. GenomeSpace http://www.genomesp...3767 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief descri...ALF A Simulation Framework for Genome Evolution http://www.cbrg.eth...tion test bed for hypotheses of genome evolution http://acb.qfab.org...ects/gametes/?source=navbarGASP Genometric...ical composition of typical metagenome d...3747 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction i...analytically. CASTp can be used to study surface features and functional regions of pro...eins such as Kinases and the conserved structural features of their immediate environmen...3754 days ago
Next generation sequencing in R or bioconductor environment
...samtools, rtracklayer, GenomicFeatures and BSgenome. Compared to the IRange...t gene, exon, miRNA or custom features such as most conserved elemen...omaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat packa...dgeR", "leeBamViews", "GenomicFeatures", "BSgenome.Celegans.UCSC.ce2...3635 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and refer...ng Li from the Sanger Centre. Features extensive supporting tools fo...na reads to a FASTA reference genome. By Andrew D. Smith and Zhenyu...zner from UCSD. (published in Genome Research)RMAP (A program for ma...3529 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ http:...3559 days ago
Apps for Busy Bioinformatics Researchers !!!
...well as a PubMed viewer. Key Features: Look up genes by symbol...p/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first hand...revisae genes and chromosomal features. Search gene names, gene desc...ne alsocontains an integrated genome browser with information on gen...3551 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
DEPARTMENT OF BIOTECHNOLOGY Centre For DNA Fingerprinting And Diagnostics (CDFD), Hyderabad...huvaneswar National Institute Of Immunology, New Delhi National Centre For Plant Genome R...2581 days ago