MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly important. Using the power of...2929 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Ma...2929 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...mes. It works by offering a standard software pipeline for identifying genomic features (i.e., protein-encod...nes. RASTtk offers a choice of software for identifying and annotating genomic features as well as the abili...2929 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain t...similarity regions, and then tries to extend them to local alignments. This genomic search tool uses multiple tra...2924 days ago
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RCircos: an R package for Circos 2D track plots
...ots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data. It can also se...2906 days ago
2905 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...tances. Results: We present Cnidaria, a practical tool for clustering genomic and transcriptomic data with...r phylogenetic distances. We successfully simultaneously clustered 169 genomic and transcriptomic datasets f...2878 days ago
2873 days ago