BOL

Results for "gff"

Wire posts

• • Jit@jit.aber

  

  Count the number of "pattern" occurrence in a file grep -o 'pattern' anc.annots.gff | wc -l #Linux #grep #Count #Number #Occurrence

  3612 days ago

• • Jit@jit.aber

  

  Plotting alignment genome.crg.es/software/gfftools/GFF2APLOT.html #Alignment #Plot #Genome #gff #gfftools

  2581 days ago

• • BioJoker@biojoker

  

  Print the lqst line of the file zith Perl. $ perl -ne 'END {print $last} $last= $_ if /\S/' blocks_coords.gff #Last #Line #Perl

  1750 days ago

• • biogeek@biogeek

  

  (grep ^"#" in.gff; grep -v ^"#" in.gff | sort -k1,1 -k4,4n) | bgzip > sorted.gff.gz; tabix -p gff sorted.gff.gz; #GATK

  1532 days ago

• • Jit@jit.aber

  

  Easily visualise regions of your GFF file https://fmalmeida.github.io/posts/plot-dna-features-tutorial/ #GFF #Visualize

  1226 days ago

• • Neelam Jha@neelam

  

  Genbank2GFF https://github.com/bioperl/bioperl-live/blob/master/bin/bp_genbank2gff3 #Genbank #GFF

  630 days ago