RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffol...arative genome information and paired-end reads. http://www.ncbi.nlm.nih.gov/pubmed/23307812 http://bioe...2945 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...a couple of minutes on a standard desktop computer. More at http://www.exelixis-lab.org/web/software/pear Paper: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3933873/2945 days ago
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RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard...2924 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets o...2923 days ago
YASS :: genomic similarity search tool
...ch step (as provided for example by iedera). Main features of YASS are: multiple, possibly overlapping seeds and a new hit criterion to ensure a good sensitivity/selectivity tra...2919 days ago
Painless package development for R
...lt layout whenever you’re writing a significant amount of code. Before you get started be sure to check out: devtools Google Group – https://groups.google.com/forum/#!forum/rdevtoo...2918 days ago
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