Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core S...2622 days ago
2595 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of th...enomes are currently sequenced to high precision, our theoretical analyses and computer simulations indicate that our...2549 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genom...sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It al...2544 days ago
2510 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that...ed interface:Access your data at any time from any computer with a working internet conne...Data..'). Extensibility:Algorithm developers and computer programmers can develop their...2500 days ago
2496 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can s...all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good rea...2370 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank...takes full advantage of recent multi-core personal computers without requiring any additi...small RAM footprint, Ready to be used on desktop computer, cluster, cloud as well as wi...2352 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence se...he software is designed to run on multiple cores and servers and exhibits very good sca...2241 days ago