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Installing Bio::SCF perl module
...uncompr.o uncompr.cgcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzclose.o gzclose.cgcc -O3 -D_LARGEFILE64_...ARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o test/minigzip.cgcc -O3...2216 days ago
- ...u10) ...➜ redundans git:(master) ✗ python2 redundans.py -v -i test/*_?.fq.gz -f test/contigs.fa -o test/run1Options: Namespace(fasta='test/contigs.fa', fastq=['test/5000_1.fq.gz', 'test/5000_2.fq.gz', 'test/...
2188 days ago
My commonly used commands in Bioinformatics
...extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz - assembly.fasta racon_assemb...2108 days ago
Frequent parameters for bioinformatics tools !
...q 85 --min_window_q 65 FastQ Screen --aligner bowtie2' (bwa for PacBio) --subset 1000 (for PacBio) SPAdes --careful --disable-gzip-output --cov-cutoff auto...1283 days ago
Short-read assembly using Spades !
...ere, or try it later on your own data. Get data We will use the same Illumina data as we used above: illumina_R1.fastq.gz: the Illumina forward reads illumina_R2.fastq.gz: the Illumina reverse reads...823 days ago
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