Results for "gz"
Bio-Scripts
Installing Porechop on Ubuntu !
...be/anaconda3/bin ➜ Porechop git:(master) porechop -h usage: porechop -i INPUT [-o OUTPUT] [--format {auto,fasta,fastq,fasta.gz,fastq.gz}] [-v VERBOSITY]...2108 days ago
- ...neta_Afasta_gapfilled_genome/perfect.perfect_cov.gz ./ 01.stats" echo "[REAPR...apr_1.0.18/reapr score -P 5 00.assembly.fa.gaps.gz 00.in.bam 01.stats $fcdcutoff...neta_Afasta_gapfilled_genome/perfect.perfect_cov.gz ./ 01.stats echo "[REAPR p...
2101 days ago
- ...object lib/zlib-1.2.7/CMakeFiles/zlibstatic.dir/gzclose.o [ 6%] Building C object lib/zlib-1.2.7/CMakeFiles/zlibstatic.dir/gzlib.o [ 7%] Building C objec.../api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o [ 43%] Buildi...
2101 days ago
Install Python locally on shared Linux server !
...ad the python source and extract it mkdir ~/python cd ~/python wget https://www.python.org/ftp/python/2.7.11/Python-2.7.11.tgz tar zxfv Python-2.7.11.tgz find ~/python -type d | xarg...2100 days ago
- ...Compare GATK's internal pileup to a reference Samtools mpileup CheckTerminatorBlock (Picard) Asserts the provided gzip file's (e.g., BAM) last blo...
2078 days ago
- library(vcfR) # Input the files. vcf
2063 days ago
- ...ig.links/sv2.fasta greg200k-sv2.2/orig/ greg200k-sv2.2/orig/orig1.fasta.gz 0 18.6M 0 32768 0...78 0 0:17:22 0:00:01 0:17:21 18767greg200k-sv2.2/orig/orig2.fasta.gz greg200k-sv2.2/orig/sv1.fast...
2037 days ago
- ...ort.c htslib-1.9/bcf_sr_sort.h htslib-1.9/bgzf.c htslib-1.9/bgzip.1 htslib-1.9/bgzip.c htsl...tslib-1.9/test/auxf.fa.fai htslib-1.9/test/bgziptest.txt htslib-1.9/test/bg...bcf_sr_sort.c gcc -g -Wall -O2 -I. -c -o bgzf.o bgzf.c gcc -g -Wall -O2 -...
2022 days ago
Installing Platypus on Ubuntu !
....o bcf_sr_sort.c gcc -g -Wall -O2 -I. -c -o bgzf.o bgzf.c gcc -g -Wall -O2 -I. -c...o knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico...naconda3/envs/py27/include/python2.7 -c tabix/bgzip.c.pysam.c -o build/temp.lin...2022 days ago
- ...m.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.8.1+-x64-linux.tar.gz # decompress tar -zxvf ncbi-blast-2.8.1+-x64-linux.tar.gz # add BLAST location to sy...
1764 days ago
