2359 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the co...mp; analysis, gene expression & regulation, personal genome analysis, and cancer genomics. The grading will be...2350 days ago
Reference-free prediction of rearrangement breakpoint reads
lideSort-BPR ( b reak p oint r eads) is based on a fast al...rrectly with no false-positive reads. Moreover, evaluation on a real prostate cancer dataset shows that the propos...2251 days ago
2170 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-th...ts, and is being used in clinical sequencing trials in the Mainstreaming Cancer Genetics programme. ...2020 days ago
1544 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
SVEngine (Structural Variants Engine) SVEngine is a multi-purpose and self-contained...les (see Manual) and NEWICK files for specifying clonal phylogenetic trees in cancer. SVEngine outpus alterred co...1402 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is be...pted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of each can...1230 days ago
872 days ago
872 days ago