fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version...the results of ADMIXTURE and STRUCTURE-like mixture models. RADpainter, finestructure and ChromoPainter for RAD tag data used for non-model organisms. Scripts to perfor...2631 days ago
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ChromHMM: Chromatin state discovery and characterization
...tions to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of e...2566 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...ilies based on sequence similarities; dbCAN make all pre-computed data freely available to the public, including sequence alignments, hidden markov models (HMMs) and phylogenies...2526 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to con...le proteins, which utilizes a coarse-grained energy model. The overall quality is calcu...2500 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction an...of non-coding RNAs. It uses SVM-based model for the discrimination betwee...NAs and RandomForest-based prediction model for the classification of ncR...sed for the development of prediction model. The standalone version...2477 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector c...nt multi-class classification Cross validation for model selection Probability estima...pidMiner, PCP, and LIONsolver. Automatic model selection which can generate...2461 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error corre...r-based correctors. In addition, Musket is multi-threaded using a master-slave model and demonstrates superior par...2335 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific fea...he input to the next step, the simulation stage. The simulation stage uses the model built in the previous step to...2323 days ago