1934 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
...ar, it accomplishes this by: Learning locus-specific PCR stutter models using an EM algorithm M...eles from population-scale sequencing data Employing a specialized hidden Markov model to align reads to candidate a...1878 days ago
geck: trio-based comparative benchmarking of variant calls
Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype Caller on the high-confidence SNPs of the NIST Ashkenazim trio and t...1805 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...shed state-of-the-art multiple sequence alignment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hidden Markov models and partition functions to c...1754 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome si...1707 days ago
Machine learning training and courses in bioinformatics !
...zation. In this class, we will learn basics about probabilistic models and machine learning techniques. We will focus on probabilistic models (Markov models, Hidden Markov models, and Bayesian network...1579 days ago
modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the exp...ation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a...l and global explanations. Tools for model exploration unite with tools...1557 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants wi...ts (indels), and structural variants (SVs) simultaneously with a single simple model. More at https://...1552 days ago
1520 days ago
DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution
DeepHiC is a GAN-based model for enhancing Hi-C data resolution. We developed this server for helping...g could be performed according to our published code. We provided trained models for various depth of low-cov...1517 days ago