Results for "human reference genome"
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MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies r...3006 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3006 days ago
- RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations betw...es. RATT is able to transfer any entries present on a reference sequence, such as the syst...
3006 days ago
- Pilon is a software tool which can be used to: Automatica...ion Pilon requires as input a FASTA file of the genome along with one or more BAM fi...ysis to identify inconsistencies between the input genome and the evidence in the reads...
3005 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3005 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3005 days ago
- ...ram for convenient conversion of genome coordinates (or annotation f...en different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh...CrossMap is designed to liftover genome coordinates between assemblie...rogram for aligning sequences to reference genome. We do not recommend using C...
3005 days ago
- Spines Spines is a collection of so...developed and used by the Vertebrate Genome Biology Group at the Broad In...elized program for high-sensitivity, genome-wide synteny; Papaya, an all-....broadinstitute.org/science/programs/genome-biology/spines
3005 days ago
- flo - same species annotations lift over pipeline Lift over...s the process of transferring annotations from one genome assembly to another. Usually...lift over is done because there is a new, improved genome assembly for the species and...
3004 days ago
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses differ...r NCBI Remap. More at http://www.ncbi.nlm.nih.gov/genome/tools/remap API http://www.n...
3003 days ago
