Results for "human reference genome"
Top-level pages
Best book Titles for Learning Bionformatics
...ge University Press Guide to Human Genome Computing, M. J. Bishop...yer, 2002, Benjamin/Cummings Genomes, Terence A. Brown, 2002, Joh...toph Kannicht (Editor), 2002, Humana Press Peptide Arrays on Memb...raphs and Networks : From the Genome to the Internet, Stefan Bornh...3920 days ago
- Genome Browser is the platform/database used for searching and retreiving sequences and annotation of genomes belong to various eukaryotes...: http://www.ensembl.org/index.html http://ensemblgenomes.org/ http://genome.ucsc.edu...
3917 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island is a stretch of DNA (....planet-source-code.com/vb/scripts/ShowCode.asp?txtCodeId=75049&lngWId=1 Refere...3827 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...oughput sequencing data using reference-based compression. Fritz et a...008 PubMedCentral [requires a reference sequence] Quake: quality-awa...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubMed...ent de novo assembly of large genomes using compressed data structure...3781 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in...information about biological sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...3759 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...LF A Simulation Framework for Genome Evolution http://www.cbrg.ethz.c...on test bed for hypotheses of genome evolution http://acb.qfab.org/ac...tes new haplotype data from a reference population of haplotypes....://www.vortex9.org/vortex.htmlReferences: Image www.evolution-of-...3739 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing d...stitute a foo with a bar in a line with a regexp. Reference/Sources: http://genomics-arr...n/2010/11/some-unixperl-oneliners-for.html http://genomespot.blogspot.com/2013/08/a-se...3630 days ago
Next generation sequencing in R or bioconductor environment
...klayer, GenomicFeatures and BSgenome. Compared to the IRanges c...analysis: snpMatrix BSgenome BSgenome provides an object...omaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat pac...storing alignments against a reference genome. The two main funct...3627 days ago
Commercial and public next-gen-seq (NGS) software
...uences produced on a Illumina Genome Analyzer. A suite created by the...d snps. Align/Assemble to a reference BFAST - Blat-like Fast Accura...DNA sequences (reads) to the human genome at a rate of 25 million re...equence database, such as the human reference genome. By default, BWA finds an alignm...3521 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ htt...3551 days ago
