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Results for "identifies"

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• • Neelam Jha@neelam

  

  LTR_retriever: accurately identifies and annotates LTR retrotransposons and use LAI to evaluates the continuity of genome assemblies.

  LTR_retriever is a command line program (in Perl) for accurate identification of LTR retrotransposons (LTR-RTs) from outputs of LTRharvest, LTR_FINDER, and/or MGEScan-LTR and generating non-redundant LTR-RT library for genome annotations. By default, the program will generate whole-genome LTR-RT...

  Tags: LTR_retriever, accurately, identifies, annotates, LTR, retrotransposons, LAI, evaluates, continuity, genome, assemblies.

  1945 days ago

• • Jit@jit.aber

  

  PhiSpy: PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes

  PhiSpy identifies prophages in Bacterial (and probably Archaeal) genomes. Given an annotated genome it will use several approaches to identify the most likely prophage regions. Initial versions of PhiSpy were written by Sajia Akhter (sajia@stanford.edu) Edwards Bioinformatics Lab Improvem...

  Tags: PhiSpy, identifies, prophages, Bacterial, probably, Archaeal, genomes

  1410 days ago