Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 m...2364 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high cov...1%) error rate, 100 × coverage Illumina data on average has an error...is mainly aimed at error correcting Illumina reads for subsequent assembly...mance of QuorUM by correcting actual Illumina reads from genomes for which...2363 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
...er is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it funct...sm+Racon pipeline. For the best possible assemblies, give it both Illumina reads and long read...2361 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...C results of each fastq file/pair.Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Illumina 1.8 or newer formats2358 days ago
ONT assembly and Illumina polishing pipeline
...olish canu contigs using racon (optional). Map a paired-end Illumina dataset onto the contigs obta...nbsp;mem. Perform correction of contigs using pilon and the Illumina dataset....2348 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observations only incorp...2343 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...accurate: the contig N50 length is more than ten-times greater than an Illumina-only assembly (678kb versus 5...ts, and other genomic features that were almost entirely absent in the Illumina-only assembly.2342 days ago
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
HiC-Pro was designed to process Hi-C data, from raw fastq files (paired-end Illumina data) to the normalized contact maps. Since version 2.7.0, HiC-Pro supports the main Hi-C protocols...2335 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum appr...2335 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the high accuracy of Illumina sequence by eschewing an expl...2321 days ago