Results for "indels"
Top-level pages
Commercial and public next-gen-seq (NGS) software
...s, clean and filter contigs, look for snps and indels., filter snps, do statistics...a fast and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite...detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to...3532 days ago
Software packages for next gen sequence analysis
...a fast and memory-efficient manner. Robust to INDELs and MrsFAST has a bisulphite...eqMap - Supports up to 5 or more bp mismatches/INDELs. Highly tunable. Written by H...detection tool. It detects homozygous SNPs and indels by aligning shotgun reads to...3256 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Bayes Description: finds SNPs, Indels, MNPs; reports variants based...SOAPindel Description: detects indels from NGS paired-end sequencin...hed tumor-normal samples; detects indels; runs on *nux-like platform...cing studies; Annotaties SNVs and INDELs; 4 models- autosomal dominant...2922 days ago
Genome Assembly Tools and Software - PART1 !!
...mparable to conventional mapping based pipelines (see evaluation in the tex directory). The assembly does not only encode SNPs and short INDELs, but also retains long deleti...2699 days ago
- ...only-assembler runs only assembling (without read error correction) --careful tries to reduce number of mismatches and short indels --continue cont...
2364 days ago
My commonly used commands in Bioinformatics
...nucmer -p nucmer assembly.fasta racon_assembly.fasta show-snps -C -T -r nucmer.delta This reports Racon's changes in a table. You can exclude indels with the -I option...2124 days ago
Frequent parameters for bioinformatics tools !
...ing) -a -x map-ont samtools mpileup (SNP detection) -uRI bcftools call (SNP detection) --variants-only --skip-variants indels --output-type v --ploidy 1...1299 days ago
Short-read assembly using Spades !
..._all_illumina -1 is input file of forward reads -2 is input file of reverse reads --careful minimizes mismatches and short indels --cov-cutoff auto compu...839 days ago
