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...rve heterozygotes which are often collapsed by other assemblers. Its ultimate goal is to find a minimal set ofunitigs to represent all the information in raw reads.Fermi follows th...2796 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for neutral markers (e.g. SNPs) and loci under selection (QTL...2773 days ago
- BBMAP • a solution for everything That content has been reformatted and it is being expanded to include more information. There are common options for most BBMap suite pro...
2765 days ago
- ...y changes, and a number of other relationships. However, most of the information in read-to-reference or genom...d more context to understand, including alignments and other genomic information from multiple chromosomes. We...
2754 days ago
- ...main pipeline, to also extract the intronic regions flanking each exon, investigate putative paralogs, and calculate sequencing depth. For more information, please see our wiki. H...
2740 days ago
- ...genome size in total reads from a single experiment. This is enough information to reconstruct at least some...ence genome of the species. However, in most typical protocols, this information is disregarded and the refere...
2718 days ago
- ...e: ./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out output_prefix Type ./minia for a quick explanation of the parameters. For more information, refer to the manual. K...
2706 days ago
- ...iginal PRISM publication can be found here. The authors may be contacted via e-mail at: prism at cs.toronto.edu. Additional information is available in the PRIS...
2703 days ago
- ...es a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses information from assemblies made with ill...
2694 days ago
- pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode) synteny...
2694 days ago
