A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...rom a de novo assembly against a closely related reference. IMAGE, an iterative approach for closing gaps in assembled genomes using mate pair information. It is able to close gaps lef...2570 days ago
2562 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information such as gene ordering and the...2559 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using diverse information sources. GRASS offers a mixed-integer...2559 days ago
Synteny Portal: a web-based application portal for synteny block analysis
...SC genome browser database, (ii) visualize and download syntenic relationships as high-quality images, (iii) browse synteny blocks with genetic information and (iv) download the details...2558 days ago
Omega2: metagenome assembly pipeline
...nches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then merged to contigs and scaffolds using mate-pair information. In comparison with three de...2511 days ago
CoreTracker, a codon reassignment tracker
...tering approach that explore all possible reassignments in every genomes from the input set, and retain only the most promising one. Detailled information about the package, installati...2522 days ago
I-PV: Interactive Protein Sequence Visualization
I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec2518 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...the classification of ncRNAs into different classes. The structural information based graph properties were u...P.S. (2014) Prediction and classification of ncRNAs using structural informationBMC Genomics 2014, 15:1272504 days ago
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