Results for "input"
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Most Commonly used Awk by Bioinformatician
...umn 3 is larger than column 5: awk '$3>$5' input.txt > output.txt extract column 2,4,5: awk '{print $2,$4,$5}' input.txt > output.txt awk 'BEG...NF;++i)c[$i]++}END{for (x in c) print x,c[x]}' input.txt deal with simple CSV: a...3921 days ago
List of In-silico Binding Site Prediction Tools
...recognition servers, requiring only a 3D model and list of templates as inputs. A simple web interface is a...similarity of the sequences or the folds of the compared proteins. The input to the MultiBind server is a...3753 days ago
Next generation sequencing in R or bioconductor environment
...that takes a ranked list of genomic regions as input and outputs short DNA sequenc...n ShortRead The ShortRead package provides input, quality control, filtering,...negative binomial distribution. It expects as input a data frame with the raw rea...3633 days ago
Commercial and public next-gen-seq (NGS) software
...put that uses the probability files instead of the sequence files as an input for alignment to a reference...latform for manipulating, analyzing and viewing WGA data, regardless of input type. Developers are Rene War...3527 days ago
A guide for complete R beginners !
...ee later) Working directory This is the directory used to store your data and results. It is useful if it is also the directory where your input data is stored. Mac/Linux:...3370 days ago
Software packages for next gen sequence analysis
...put that uses the probability files instead of the sequence files as an input for alignment to a reference...latform for manipulating, analyzing and viewing WGA data, regardless of input type. Developers are Rene War...3251 days ago
- ...rform various other functions. None of these will break pairing, if the input is paired. Quality trimming...stograms (base composition, quality, etc) Subsampling (to a fraction of input reads, or an exact number of...
2722 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...format as well as text files Can input GEO SOFT files Partek Fl...in one population; Fairly popular Input: Reference Haplotypes: Links...(computes qc stats on sam files) Input: SAM Output: SAM Mendel...o predict non-linear interactions Input: Configuration file, Data fil...2917 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...l annotation (Gene Ontology, KEGG, REACTOME and NCG 4.0). It requires gene list in the form of Entrez Gene ID (UIDs) or Official gene symbols as a input. GeneSCF supports more organi...2880 days ago
Genome Assembly Tools and Software - PART1 !!
...uence reads and a file of quality-value as the input. Since the quality-value file...ssemblies and alignments.Supporting a range of input assembly formats, Tablet prov...additional files van be downloaded below. The input data is given by pre-assemble...2694 days ago
