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• • LEGE@lege

  

  Install Nexflow on Linux !

  # Make sure that Java v8+ is installed: java -version # Install Nextflow curl -fsSL get.nextflow.io | bash # Add Nextflow binary to your PATH: mv nextflow ~/bin/ # OR system-wide installation: # sudo mv nextflow /usr/local/bin

  962 days ago

• • Abhinav@abhinav

  

  Install MySQL on Ubuntu !

  ...the following command: sudo apt install mysql-server #Once the installation is completed, the MySQL servi...l #To secure MySQL #Run the script by typing: sudo mysql_secure_installation #To log in to the MySQL se...

  919 days ago

• • Abhinav@abhinav

  

  Install Install Gffcompare on Ubuntu / Linux

  ...9.8.Linux_x86_64.tar.gz # make symlink ln -s ~/workspace/bin/gffcompare-0.9.8.Linux_x86_64/gffcompare ~/workspace/bin/gffcompare # check Installation ~/workspace/bin/gffcompare

  823 days ago

• • Abhinav@abhinav

  

  Install R in Ubuntu / Linux !

  ...ct the source code. Next we’d configure the installation with --with-x=no which tells...o set up the R we will be using, except the installation location. ## download and.../R-3.5.1/bin/R ~/workspace/bin/R ## test installation cd ~/workspace/bin ~/worksp...

  823 days ago

• • Abhinav@abhinav

  

  Install StringTie on ubuntu / Linux !

  ...e-1.3.0.Linux_x86_64.tar.gz # make symlink ln -s ~/workspace/bin/stringtie-1.3.0.Linux_x86_64/stringtie ~/workspace/bin/stringtie # test installation ~/workspace/bin/stringtie -h

  823 days ago

• • Jit@jit.aber

  

  Install GATK 4 using conda !

  ...ate -f gatkcondaenv.yml -p ~/workspace/bin/conda/gatk # make symlink ln -s ~/workspace/bin/gatk-4.0.2.1/gatk ~/workspace/bin/gatk # test installation source activate ~/workspace/...

  811 days ago

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