Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformat...ations, converting and substituting text, deleting and printing certain lines, parsing logs, editing files in-place,...3639 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for...package provides input, quality control, filtering, parsing, and manipulation functionali...tation Rsamtools Rsamtools provides functions for parsing and inspecting samtools BAM f...3636 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA...- separated format, VCF, pileup, HGVS Output: VCF, JSON, Statistics ABSOLUTE...1000 genomes, HapMap, OMIM, NCBIGene Output: VCF + JSON...2920 days ago
Awesome perl frameworks, libraries and software - PART 1
...and generating structured data as JSON from parsed results. Formerly...r / IRC gateway in perl makamaka/JSON - perl implementation of...mail-MIME - perl library for parsing MIME messages Perl-Toolchain...ect - A group of modules for parsing a Nagios configuration and re...2500 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages—the precurso...rnal resources. For example, if you need to write a web service which accepts JSON da...2333 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so require a C com...Unix-style MakefileWriting Makefile for Bio::SCFWriting MYMETA.yml and MYMETA.jsonjit...2229 days ago