The kebabs package provides functionality for kernel based analysi...r the similarity measure.
http://www.bioinf.jku.at/software/kebabs/
http://bioconductor.org/packages/release/bioc/vignettes/kebabs/inst/doc/kebabs.pdf
The kebabs package provides functionality for kernel based analysis of biological sequences via Support Vector Machine (SVM) based methods. Biological sequences include DNA, RNA, and amino acid (AA) sequences. Sequence kernels define similarity measures between sequences. The package im...