Results for "kmer"
Bookmarks
Understanding Following table and graphs Duplication level kmer profile per base GC content per base N content per base quality per base sequence content per sequence GC con...2954 days ago
- ...specified assembler (Velvet or SPAdes in this version) and using a given kmer size. 3. Merging all the asse...ion. 4. Combining all the assemblies of the partition (using velvet with kmer value of 31). 5. Finaly, re-a...
2726 days ago
- ...patient A typical Minia command line looks like: ./minia -in reads.fa -kmer-size 31 -abundance-min 3 -out...ion of the parameters. For more information, refer to the manual. KmerGenie can be used to dete...
2717 days ago
Standardized velvet assembly report
...it,gfClient,gfServer to your PATH. If using BLAST, add blastall and formatdb. Edit permute.sh to your liking, paying particular attention to the kmer, cvCut, expCov, and other fla...2716 days ago
WGS Celera Assembler version 8.3rc2
...ready for installation.The source code package includes full source code (revision 4627), Makefiles, and scripts. A subset of the kmer package (http://kmer.sourceforge.net/, version r19...2594 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
...genome genome.fa --distanceLow distanceLow --distanceHigh distancehigh --extendedContig extendedContigs.fa --remainingContig remainingContigs.fa [--kMer k --insertVariation insertVar...2221 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...s that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools a...g tools. Contains tools for filtering k-mer hashes and FastQ/A files: kmer: Produces a k-mer hash contai...1993 days ago
RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
RePS (Repeat-masked Phrap with scaffolding), a WGS sequence assembler, that explicitly identifies exact kmer repeats from the shotgun data and removes them prior to the assembly. The...1595 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...sperated files for interleaved paired-end data sets Optional -k INT: kmer_length (<=32, default: 23)...orrection within k-bp window (default: 4) -wk FLOAT: the proportion of kmers that are used to estimate we...1563 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with additional capabilities of error-correcting and extend...mode=extend el=50 er=50To error-correct and extend at the same time, using a kmer length of 62:tadpole.sh in=re...1563 days ago
