Results for "kmer"
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Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...;gnuplot/4.6.5) – we can plot the kmer content of the assembly compared to the kmer content of the read set. The...now use kat comp to create a kmer content comparison. Use ...png file that was produced. Does the kmer content look good to you? Ho...1349 days ago
Comment on "Estimate Genome Size"
...find_valleys.pl to help pinpoint the actual peak find_valleys.pl fastq.counts_0.histo # estimate the size and coverage estimate_genome_size.pl --kmer=31 --peak=42 --fastq=reads1.f...1909 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...that are reserved in a cluster. [10] -R --max-reg [INT] Maximum allowed length of unaligned read part to trigger a bwt-based query. [300] -k --bwt-kmer [INT] Length of BWT-seed. [19...2134 days ago
- ...parallel execution [default : 1] -o <value>, --output <value> output file name [default : mashmap.out] -k <value>, --kmer <value> kmer size <= 16 [default : 16]...
2134 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...te::121.629*3.27] mid_occ = 525[M::mm_idx_stat] kmer size: 15; skip: 5; is_HPC: 0;...::1649.738*17.48] mid_occ = 525[M::mm_idx_stat] kmer size: 15; skip: 5; is_HPC: 0;...::3086.956*18.40] mid_occ = 525[M::mm_idx_stat] kmer size: 15; skip: 5; is_HPC: 0;...2293 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...I+D) larger than this, it won't be taken into account. If >= 1.0, this filter is disabled. [1.0] Algorithmic options: -k INT Graph construction kmer size. [6] -l INT Number of ed...2304 days ago
- ...her assemblers in that it generates a final assembly from multiple kmers. A list of kmers is automatically selected by...nbsp;for the path to the singles reads. If desired, a list of kmers can be specified with t...
2356 days ago
