1455 days ago
Download minikraken database !
...ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikraken2_v2_8GB_201904.tgz % Total...M (JitMetaENV) ➜ day3 ls minikraken2_v2_8GB_201904.tgz (JitMetaE...tMetaENV) ➜ krakenDB mv ../minikraken2_v2_8GB_201904.tgz . (JitMet...ed.unmapped.R2.fastq.gz > evol1.kraken1208 days ago
Extract fasta header with ids !
#Extract all the fasta header name with certain ids kraken --db ../../../../DATABASE/minikraken_20171019_8GB.tgz out.fa more out.fa_class.txt | grep "227859" | awk '{print $2}' > all_real_ids.txt...870 days ago