Shruti Paniwala
A Bioinformatician
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Install kraken on linux
By Shruti Paniwala 1664 days ago
$ conda install -c bioconda kraken
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /home/anaconda3
added / updated specs:
- kraken
The following packages will be downloaded:
package | build
---------------------------|-----------------
jellyfish-1.1.12 | h6bb024c_1 3.1 MB bioconda
kraken-1.1 | h470a237_2 114 KB bioconda
------------------------------------------------------------
Total: 3.2 MB
The following NEW packages will be INSTALLED:
jellyfish bioconda/linux-64::jellyfish-1.1.12-h6bb024c_1
kraken bioconda/linux-64::kraken-1.1-h470a237_2
perl pkgs/main/linux-64::perl-5.26.2-h14c3975_0
Proceed ([y]/n)? y
Downloading and Extracting Packages
kraken-1.1 | 114 KB | ################################################## | 100%
jellyfish-1.1.12 | 3.1 MB | ################################################## | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
$conda install -c bioconda kraken-all
Collecting package metadata (repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /home/anaconda3
added / updated specs:
- kraken-all
The following packages will be downloaded:
package | build
---------------------------|-----------------
kraken-0.10.6_eaf8fb68 | 2 98 KB bioconda
kraken-all-0.10.6_eaf8fb68 | 0 857 B bioconda
perl-threaded-5.26.0 | 0 4 KB bioconda
------------------------------------------------------------
Total: 103 KB
The following NEW packages will be INSTALLED:
kraken-all bioconda/linux-64::kraken-all-0.10.6_eaf8fb68-0
perl-threaded bioconda/linux-64::perl-threaded-5.26.0-0
The following packages will be SUPERSEDED by a higher-priority channel:
kraken bioconda/label/cf201901::kraken-1.1-h~ --> bioconda::kraken-0.10.6_eaf8fb68-2
Proceed ([y]/n)? y
Downloading and Extracting Packages
kraken-0.10.6_eaf8fb | 98 KB | ################################################## | 100%
kraken-all-0.10.6_ea | 857 B | ################################################## | 100%
perl-threaded-5.26.0 | 4 KB | ################################################## | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
