MeDuSa: a multi-draft based scaffolder
...ither prior knowledge on the microrganisms dataset under analysis (e.g. their phylogenetic relationships) or the availability of paired end read libraries.2272 days ago
Building Web UIs With Mojolicious Perl
...other features one needs to build a web application. It's easy to install, has an applciation generator script and many plugins and extensions. Libraries for developing Web applicatio...2322 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...practical usage, our Multi-CAR does not require prior knowledge concerning phylogenetic relationships among the draft and reference genomes and libraries of paired-end reads. To valid...2252 days ago
fragScaff: Genome Assembly with Contiguity Preserving Transposition
Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of...2183 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...branch. To use the latest version, first run the following commands: cd SALSA make To run the code, you will need Python 2.7, BOOST libraries and Networkx(version lower th...2151 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...ry-intensive, limiting their applications to small data sets with few libraries. Texas A&M University...pliced isoforms and expression levels while utilizing as many RNA-Seq libraries as possible that contain hund...2133 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
You can: improve your Python programming language coding skills. develop deep learning applications using popular libraries such as Keras, TensorFlow, PyTorch, and OpenCV. ...1556 days ago
Leaflet: JavaScript libraries for interactive maps
Leaflet is one of the most popular open-source JavaScript libraries for interactive maps. Features Interactive panning/zooming Compose maps using arbitrary combinations of:...1546 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki1510 days ago
Supernova: generates phased, whole-genome de novo assemblies from a Chromium-prepared library.
...ared library. Please see Achieving Success with De Novo Assembly and System Requirements before creating your Chromium libraries for assembly. Supernova shou...1435 days ago