BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic st...cess for most NGS alignment programs. Large insert sizes, introduction of library preparation protocol artifact...2697 days ago
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2558 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...lies in order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illumina-based projects. With...2541 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...community diversity. Grinder may also be used to help decide between alternative sequencing methods for a sequence-based project, e.g. should the library be paired-end or not, how man...2536 days ago
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2504 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-cl...2466 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outpu...2349 days ago
2336 days ago