Results for "liftover"
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LiftOver is a necesary step to bring all gene...nalysis to the same reference build. LiftOver can have three use cases: (1...umber over different versions Run: liftOver input.bed hg18ToHg19.over.cha...ase in an exon For example: If you liftOver chr4:6497-6497 from hg19 to G...2154 days ago
Bookmarks
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3003 days ago
- ...t;> mm10 (GRCm38)). It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF. CrossMap is designed to liftover genome coordinates between as...
3003 days ago
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- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
Tags: Bioinformatics, Computational Biology, Education, liftover, N50, NGS, Assembly, Genomics
3003 days ago
- flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually lift over is done because there is a new, improved genome assembly for the species and good quality annotations (maybe manually curated or experimen...
Tags: Bioinformatics, Flo, Liftover, Annotation
3001 days ago
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