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Progressive Cactus is a whole-genome alignment package. Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules https://github.com/glennhickey/progressiveCactus2559 days ago
- ...nbsp;AMOS-Hybrid v1.0 (142 MB tar.gz file). Assembly and sequence-composition guided finishingContigs from a shotgun assembly are typically linked together in a graph structure...
2557 days ago
Alfred: BAM Statistics and Feature Counting
The easiest way to get Alfred is to download a statically linked binary from the Alfred github release page. Alternatively, you can build Alfred from source. Alfred dependencies...2309 days ago
ARCS: scaffolding genome drafts with linked reads
...CS, an application that utilizes the barcoding information contained in linked reads to further organize dra...have broad utility in harnessing the barcoding information contained in linked read data for connecting high...2267 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located on the non reco...2182 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...d to: NGS short reads (Illumina HiSeq) clone-based sequencing (Fosmid or BAC clones) SMRT reads (PacBio) Oxford Nanopore reads 10X Genomics Linked-Reads proximity-ligation (Hi...2197 days ago
CGView - Circular Genome Viewer
...h labels, a title, legends, and footnotes. In addition to the default full view map, the program can generate a series of hyperlinked maps showing expanded views. The linked maps can be explored using an...2161 days ago
ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)1981 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
...ypes of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive linked-visualizations and is able to...1963 days ago
Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data
...ressing the source package, you can find an executable file ktrim under bin/ directory compiled using g++ v4.8.5 and linked with libz v1.2.7 fo...1194 days ago
