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  • ARCS: scaffolding genome drafts with linked reads

ARCS: scaffolding genome drafts with linked reads

https://github.com/bcgsc/ARCS/

ARCS requires two input files:

  • Draft assembly fasta file
  • Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)