DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found t...1140 days ago
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this p...the alignment.With our new approach we have reduced computation cost forlocal alignment , while achieving a...1140 days ago
Public Databases for Bioinformatics !
...256GB RAM 500GB of SSD storage 36TB RAID6 local storage 4 Intel Phi's (space...B RAM 500GB of SSD RAID0 storage 60TB RAID6 local storage mitra: Bassik and...256GB RAM 200GB of SSD storage 12TB RAID5 local storage Filesystem: /us...1133 days ago
Bioinformatician stuck in wet-lab
This guide is aimed at pet bioinformaticians, and is meant to guide them towards better career development. 1. Make friends with local bioinformatics groups 2. Talk to your computin...3645 days ago
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YASS :: genomic similarity search tool
...A) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA seque...al similarity regions, and then tries to extend them to local alignments. This genomic sear...2919 days ago
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