Results for "long read"
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Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3925 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell Universit.../bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP cal...tp://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annotation pipeline: a cloud...3502 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely sequenced genomes. Coupled wi...mming infrastructure often employed for the analysis of large numbers of genes, long...3801 days ago
- "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/
3678 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotat...3589 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open...3589 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation...gned to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitiv...mprovement over the state-of-the-art for PacBio read mappers. GraphMap was also d...3239 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
...dies. However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typic...ly resolved. A new generation of sequencers offering substantially longer reads is emerging, notably the Pac...3239 days ago
Resolving the complexity of the human genome using single-molecule sequencing
...t a greater complexity of the human genome in the form of variation of longer and more complex repetitive DNA that can now be largely resolved with the application of this longer-read sequencing technology. ...3235 days ago
- ...on among strains, including large event detection Pilon requires as input a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read alignment analysis to identif...
3023 days ago
