Results for "long read"
Blogs
Five unique traits of effective computational biologist
...sting; and the great biological programmer also read about the BioPerl packages, g...other clues and solutions, and learn to take a long distance view of an issue bef...ith scientific words. Thanks to all of you for reading.3965 days ago
Five points for bioinformatics software/tools
In the bioinformatics sector we mostly spend time on comp...t they’re free to download the source code and read exactly what the program does...he functionality that you need in your analysis is already coded into the program. Need...3722 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3925 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell Universit.../bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP cal...tp://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annotation pipeline: a cloud...3502 days ago
- +266 more Bookmarks
Files
- Hmm .. Don't worry you read it right .. this is not pi but bi ... "life of Bioinformatician(BI)". Disclaimer: This cartoon is solely designed to create humour and fun, not to offend any PI, supervisor or student.
3920 days ago
Bioinformatics definitions and applications !!!
There have been long discussion amongst several specialized/expert educator regarding bioinformatics arena, but everyone explain bioinformatics with their own view. I tried to explain it with a cartoon. Hope you all will like it.3903 days ago
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Pages
Bio++ : C Language libraries for your biological need
...has been change, the biological programmers are ready to use the C++ libraries of...library are designed in order to reduce the C++ long codes in a small and handy fo...tch between upper/lower case, etc.Applications: read options from a file or comman...3963 days ago
- I found several useful bioinformatics articles which exap...- this time aimed at highschool students, but fun to read for everyone. Includes...isby, Science , 289: 2309 (2000). Are you ready for the revolution? By...
3936 days ago
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Top-level pages
- An algorithm is a computable set of steps t...ch manner that from the outcome we can read a definite answer, "yes" or "...oids recomputing solutions that have already been computed. - The ma.../~jason/hmmlinks.html•http://www.breadfan.com/markov.html•http:...
3961 days ago
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on Earth today. Evidence fro...lly through phylogenetic trees. Due to the fact that evolution takes place over long...3961 days ago
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Wire posts
News
Prime Minister’s 100k Genome Project
Genomics Ebgland is destined to sequence 100,000 patients over the next five year in England. A landmark pro...overnment. Genomics England will play a key role in building on the UK’s long...3938 days ago
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in co...s from 23 breeds. The remaining SNPs were derived from the draft ovine genome. Read more @ http://res.illumina.c...3912 days ago
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Opportunity posts
Postdoc Positions - Mammalian Transcriptome Evolution at SIB
BIOINFORMATICS POSTDOC IN FUNCTIONAL EVOLUTIONARY GENOMICS Center for Integrative Genomics, University of Lausa...gins and/or evolution of protein-coding genes, alternative splicing, microRNAs, long...3933 days ago
Research Fellow @ Mendel laboratory
...eq and miRNA-Seq data. Main activities will be: (i) data analysis (short-reads mapping, variants call and a...puting facility, a non-conventional workstation of GPUs and a short- and long-term storage disk. Applica...3828 days ago
- +17 more Opportunity posts
ResearchLabs posts
- Location :European Molecular Biology Laboratory (EMBL), Heidelberg, Germany. Our long-term research objective is to understand microtubule organization in living cells, with an emphasis on mi...
3964 days ago
- Broad Area of Research: RNA biology (microRNA, lncRNA), Stem cells, Functional genomics, Epigenomics and Cancer RNAs, especially non-coding RNAs (such as microRNA, long...
3889 days ago
- +10 more ResearchLabs posts
Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl P...,together), tell me. do something if distressed; @dawn, dance;@evening, sing;read (books,$poems,stories) until...3933 days ago
You can't install David Brownlee ;-)
By mistake I ask cpan to install abs, and it return this message. jitendra@jitendra-Aspire-S3-391[parallelLastz] sudo cpan install abs [ 4:43AM]Going to read '/home/jitendra/.cpan/Metadat...1845 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...mation involved is huge, so recently, it's been read using next-generation sequenc...tween species. If the genome is considered as a long text, then anchors can be tho...next-generation sequencer at Keio University, along with a cluster machine with h...3932 days ago
The Story of You: ENCODE and the human genome
Ever since a monk called Mendel started breeding pea plants we've been learning abou...e ENCODE project, as it's called, is the latest chapter in the story of you. To read the ENCODE research papers an...3921 days ago
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Bio-Scripts
- # To follow these instructions, we'll assume your system admins have already installed these essentials: #...stics::Lite Tie::Autotie Tie::IxHash Log::Log4perl FindBin::Real Getopt::Long Catalyst::Runtime Catalyst::D...
2159 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences #...dna = Entrez.efetch(db='nucleotide',id=nm, rettype = 'fasta', retmode= 'text').read().split("\n")[1:] allseq...1151 days ago
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Polls
How long have you been a bioinformatics scientist for?
Most of the researcher have been a scientist whole life, but infact they actually started paying it with at certain time.So, how long have you been in bioinformatics domain now?3254 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...27378293 and PMID: 26384938 can be read. What's your all-time fa...in bioinformatics when you will no longer working in this field?...t of data in databases, there is already a massive need for effective...to various biological problems. A long with these updates, developer...2377 days ago
Tags
FLAS: fast and high throughput algorithm for PacBio long read self-correction.
FLAS, a wrapper algorithm of MECAT, to achieve high throughput long read self-correction while keeping MECAT's fast speed. FLAS finds additional alignments from MECAT prealigned long reads to improve the correction throughput, and removes misalignments for accuracy.Tags: FLAS, fast, high, throughput, algorithm, PacBio, long read, self-correction
1794 days ago
Comments
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
Basic commands for genome assembly https://raw.githubusercontent.com/rrwick/Long-read-assembler-comparison/master/supplementary_figures/Fig_S04_commands.png1564 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...cs and Health Benchmarking Team:Benchmarking tools, Manuscript, GitHub Sequencing Data:Data and analyses from most short, linked, and long read sequencing methods are public...1575 days ago
- +4 more Comments
