Results for "long reads"
Blogs
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and h...IIC-PRO -- detecting functional signatures by efficient discovery of long patterns in protein sequences Discover long...2005 days ago
Understating pacbio reads name !
m140415_143853_42175_c100635972550000001823121909121417_s1_p0/553/3100_11230 0.99 24...ole number Subread Region (start_stop using polymerase read coordinates) readScore barcodeScore...2002 days ago
Understanding reads mapping and flags !
...ementary alignment flag. Chimeric reads are indicative of structural...sp;in RNA-seq. In short, chimeric reads can be split in to two or mor...total length of the mapped part is longger than read length. Represen...n realignment those representative reads to the correctly position via...1849 days ago
- ...implied loop and AWK automatically reads and parses each # record of...fine, even # useful, but for longer scripts, this can be a prob..."); # => prints foobar # Reads a line from standard input an...ill execute once for each line, as long as a is positive } # You g...
1847 days ago
Coronavirus COVID ‐19 Testing Sites In India
COVID-19 is a new illness that can affect your lungs and airways. It's caused by a vir...important for people who: are 70 or over have a long-term condition are pregnant...alaya NEIGRI of Health and Medical Sciences, Shillong,...1522 days ago
Bioinformatics tools for telomere to telomere assembly !
...eline for the classification of long-read transcripts that can ass...ocessing Iso-Seq data and other long-read transcriptome data (Rich...y consensus sequences from HiFi reads (Zev Kronenberg @zevkro...h; tool for splice alignment of long transcriptomic reads to a genome, guided by a data...1003 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe...on the sequencing system used, these "reads" range from 20 to 1000 nucleo...pairs (bp) in length. Usually, length reads of 36 - 150 bp are produced f...for infectious diseases. Raw NGS dataReads can be saved as a Fasta file...1216 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 201...1059 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant...889 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. &bull...):22–234, DSRC Compressor of sequencing reads. • Roguski,..., ORCOM Experimental compressor of sequencing reads. • Grabowski...875 days ago
