Results for "long reads"
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...and depending on the file extension the input/output format is automatically chosen/set. Using BBMap Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken int...2776 days ago
- ...is phylogenetic classification of raw sequence reads into groups representing the...requiring metagenomics projects to use older, long-read technologies. Phymm,...lassify DNA sequences, can accurately classify reads as short as 100 bp. Its accur...
2776 days ago
- ...ctural variations captured by long reads or assembled contigs often n...atterns in alignments of many reads across multiple chromosomes,...n shows that there are indeed long reads that span from one gene...th long, short, or paired-end reads, Ribbon can also load coordin...
2765 days ago
- Summary: GenomeScope is an open-source web tool to rapidly estimate the...ing genome size, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential...
2358 days ago
- ART is a set of simulation tools to ge...thetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing...ncing data. ART can also simulate reads using user own read error mod...t in read simulation. ART outputs reads in the FASTQ format, and alig...
2752 days ago
- HybPiper was designed for targeted sequenc...s from high-throughput DNA sequencing reads. Targeted bait capture is a...tarts with high-throughput sequencing reads (for example from Illumina Mi...sample (single or paired-end sequence reads). When HybPiper generates seq...
2751 days ago
- ...is a genomics application for scaffolding genome assemblies with long reads, such as those produced by O...e used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads, another draft...
2751 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq i...Simulate diploid reference and read sequences, map reads, call variants and evaluate t...2733 days ago
- Background. Next-generation sequencing technologies are...w producing multiple times the genome size in total reads from a single experiment. Thi....g., mutants of the same species) directly from the reads used in the experiment. Our a...
2730 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given reads dataset into a given number o...
2726 days ago
