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Results for "long reads"

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• • Jit@jit.aber

  

  #Error filtering, pair assembly and error #correction for next-generation sequencing #reads https://academic.oup.com/bioinformatics/article/31/21/3476/194979

  2354 days ago

• • Neelam Jha@neelam

  

  Store all files in a array using perl: my @filesbwa = <$base_name/reads/$base_name.$library.bwa.*fa> #Store #Keep #Array #Perl

  2354 days ago

• • Poonam Mahapatra@poonam

  

  Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap

  2326 days ago

• • Jit@jit.aber

  

  interleave fastq files https://gist.github.com/nathanhaigh/4544979 #interleave #fastq #pair #ngs #reads

  2321 days ago

• • Jit@jit.aber

  

  Harness PacBio reads with assemblers https://github.com/PacificBiosciences/Bioinformatics-Training/wiki/Large-Genome-Assembly-with-PacBio-Long-Reads #Reads #Assemblers #PacBio

  2282 days ago

• • Jit@jit.aber

  

  reformat.sh in=reads.fq out=highQuality.fq maq=16 (that will throw away all reads with average quality below 16) #Filter #BBMap #Quality

  2170 days ago

• • Jit@jit.aber

  

  Long read extraction https://github.com/rrwick/Unicycler/wiki/Read-extraction #Reads #Extractions #Long #PacBio #Ont

  2118 days ago

• • Jit@jit.aber

  

  #Canu #assembly of long reads https://canu.readthedocs.io/en/latest/quick-start.html

  2117 days ago

• • Jit@jit.aber

  

  Scrubbing long reads https://dazzlerblog.wordpress.com/2017/04/22/1344/ #Scrub #Long #Reads #Pacbio

  2117 days ago

• • Rahul Nayak@rahul

  

  Understanding PairedEnd(PE) mapping https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/ #PE #Paired #End #PairedEnd #Mapping #Map #Learn

  2111 days ago

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