Results for "mapped"
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Comment on "List of non-commercial NGS genotype-calling software"
...ral probabilistic framework for structural variant discovery. [ paper-2014 ] manta – Structural variant and indel caller for mapped sequencing data. [ paper...1140 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping too far or too...1334 days ago
- ...uality control before computational analysis. Essentially, provides three types of quality control: read counts (such as duplicate reads, mapped reads and mapped unique reads, rRNA reads, tra...
2134 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...40[M::worker_pipeline::208.871*9.76] mapped 120736 sequences[M::worker_pipeline::288.250*12.60] mapped 101108 sequences[M::worker_pi...[M::worker_pipeline::1043.026*17.99] mapped 62540 sequences[M::worker_pip...[M::worker_pipeline::2123.177*18.01] mapped 85392 sequences[M::worker_pip...2278 days ago
- ...nomics can be used for QC also Use a genome browser to get a feeling for your results, e.g. IGV; add assembly, BAM files, annotation, transcripts mapped and browse...
2928 days ago
- ...y. Pathview automatically downloads the pathway graph data, parses the data file, maps user data to the pathway, and render pathway graph with the mapped data. In addition, Pathview a...
3033 days ago
