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Best book Titles for Learning Bionformatics
...hael Zhang (Editors), 2002, MIT Press Hidden Markov Models for Bioinformatics, Timo Kos...Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acid...ession: From Experiments to Data Analysis and Modeling, Pierre Baldi, G. Wesley H...3923 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : T...ation http://www.tannerhelland.com/1187/hidden-markov-models-viterbi-algo...Wiki page http://en.wikipedia.org/wiki/Hidden_Markov_model On CpG island paper and for...3830 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quan...iD reads in colorspace] Repeat-aware modeling and correction of short re...010 PubMedCentral Two-stage Poisson model for testing RNA-seq data. Aue...xt-generation RAD sequencing of a non-model organism. Baxter et al., PLoS...3784 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...ion under various demographic models. http://users-birc.au.dk/mail...lGAMETES Genetic Architecture Model Emulator for Testing and Eval...ontrib/archive/kernelpop/MaCS Markovian Coalescent Simulator http...structure-based substitution models http://code.google.com/p/pro...3742 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico...by solvent accessible surface model (Richards' surface) and by molecular surface model (Connolly's surface), all cal...function prediction using 3D models of proteins. ProBiS: http:/...ted ligand docking or in situ modeling. Comparing the shape simil...3749 days ago
Next generation sequencing in R or bioconductor environment
...sites of proteins in ChIP-Seq experiments. Its algorithm uses hidden Markov models (HMM) and Bayesian statistic...s bound by transcription factors. PICS identifies enriched regions by modeling local concentrations of di...3630 days ago