Results for "metagenomes"
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QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assembli...2949 days ago
- ...ngle and metagenomic assemblies, including single-base errors, insertions/deletions, genome rearrangements and chimeric assemblies presented in metagenomes. At the genome level with rea...
2929 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
...rs, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). More at https://gatb.inria...2927 days ago
- ...qualities are low in all or most reads before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or p...
2815 days ago
- MyCC, an automated binning tool that combines genomic signatures, marker genes and optional contig coverages within one or multiple samples, in order to visualize the metagenomes and to identify the reconstructed genomic fragments. More at http://www.nature.com/articles/srep24175
2618 days ago
- ...s and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome seq...tured bacteria obtained by differential coverage binning of multiple metagenomesMads Albertsen, Philip Hugenho...
2618 days ago
- ...tagenomic sequences based on an Expectation-Maximization algorithm. Users can understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled...
2615 days ago
- ...s and tutorials on how to assemble individual microbial genomes from metagenomes, as described in: Genome seq...tured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugen...
2607 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...complete set of metagenomic CAZyme genes published so far and represents the first step towards discovering novel CAZyme catalysts in metagenomes; dbCAN provides a subfa...2531 days ago
- ...cess distributed memory overlap-layout-consensus (OLC) metagenome assembler. Disco was developed as a scalable assembler to assemble large metagenomes from billions of Illumina seq...
2489 days ago
