GenomeRing: alignment visualization based on SuperGenome coordinates
...n a linear fashion as in genome browsers or by using a circular approach, where relationships between genomic regions are indicated by arcs. Both methods allow for the integration of...2663 days ago
Many-Core Engine (MCE) for Perl example
...modules for use with MCE. MCE::Candy Provides a collection of sugar methods and output iterators for pres...Carlo simulation. MCE::Subs Exports functions mapped directly to MCE methods; e.g. mce_wid. The module all...2650 days ago
2648 days ago
FSA: Fast Statistical Alignment
...based phylogenetic reconstruction methods like Neighbor-Joining build a...wartz in "Posterior Decoding Methods for Optimization and Control...ces. FSA introduces several novel methods for constructing better align...ent between the anchors using the methods described above. The include...2644 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...ism data. Version 5 implements a number of new features and analytical methods allowing extensive DNA polymo...nalyses on large datasets. Among other features, the newly implemented methods allow for: (i) analyses on mu...2644 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...Bins can be manually defined from plots, or be imported from third-party binning tools and overlaid onto plots, such that results from different methods can be compared side-by-side....2596 days ago
2557 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...as developed an automatic prokaryotic genome annotation pipeline that combines ab initio gene prediction algorithms with homology based methods. The first version of NCBI Pr...2545 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...d computer simulations indicate that our results are reasonably accurate and that they will become highly accurate in the foreseeable future. Our methods were developed as part of a p...2543 days ago
AVID: A Global Alignment Program
...ID with other popular alignment tools. To this end, we have established a format for the representation of alignments and methods for their comparison. These formats and methods should be useful for future s...2537 days ago