Results for "models"
Top-level pages
...lignments are useful for building sequence profiles or Hidden Markov Models to perform more sensitive hom..., secondary structure can be predicted with an accuracy above 70 %. 3D models can be obtained most easily i...3951 days ago
- ...similar items together. Regression - Attempts to find a function which models the data with the least error...can rush head on into a land of support vector machines, hidden markov models and neural networks. But comi...
3950 days ago
- ...(Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding...ure, developed specifically for eukaryotes. It incorporates splice site models adapted from the GeneSplicer...
3946 days ago
Best book Titles for Learning Bionformatics
...Jiang, Ying Xu, Michael Zhang (Editors), 2002, MIT Press Hidden Markov Models for Bioinformatics, Timo Kosk...998, Elsevier Science Ltd. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids...3922 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The CG island...ource code with explanation http://www.tannerhelland.com/1187/hidden-markov-models-viterbi-algorithm-cpg-islands...3829 days ago
List of bioinformatics open source projects/software.
...atics and phylogenetics webserver (NJ, PhyML, RAxML, MAFFT, MUSCLE, Newick viewer, Horizontal gene transfer detection, Reticulograms, Substitution models) UGENE integrated bioinform...3761 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...version under various demographic models. http://users-birc.au.dk/mail...g Software: Simulates complex SNP models with pure, strict epistatic i...der general isolation by distance models. http://raphael.leblois.free....regions under various demographic models http://cmpg.unibe.ch/software...3741 days ago
List of In-silico Binding Site Prediction Tools
...ediction category were those which used structural superpositions of 3D models and related templates with bo...lly automated approach for structure based function prediction using 3D models of proteins. ProBiS: http://...3748 days ago
Next generation sequencing in R or bioconductor environment
...sPeak BayesPeak is a peak calling package for identifying DNA binding sites of proteins in ChIP-Seq experiments. Its algorithm uses hidden Markov models (HMM) and Bayesian statistica...3629 days ago
Commercial and public next-gen-seq (NGS) software
...ysis Package MACS - Model-based Analysis for ChIP-Seq. MACS empirically models the length of the sequenced C...Se is a method aimed at using RNA-Seq short reads to build de novo gene models. First, candidate exons are b...3523 days ago
