Results for "modified"
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Encode sequencing data freely available to download and use for academic means
...ia DNA hypersensitivity assays, assays of DNA methylation, and chromatin immunoprecipitation (ChIP) of proteins that interact with DNA, including modified histones and transcription fa...3719 days ago
- ...also including fungi and microbial eukaryotes. Kaiju translates reads into amino acid sequences, which are then searched in the database using a modified backward search on a memory-e...
2882 days ago
- ...and so-called pseudoreads and uses the resulting contigs to generate a modified reference sequence. In this w...can very quickly, and at no additional sequencing cost, generate new, modified reference sequence that is cl...
2731 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
...Generation Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely downloaded, shared and modified. https://bmcbioinformatics.b...2552 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
...sil constraints under various molecular clock models. This is part of the PAML package. In this tutorial I will analyze an easy example modified from dataset of Inoue et...2177 days ago
SimLoRD: A read simulator for third generation sequencing reads
...integers (RNA), or using a fixed length Quality values and number of passes depend on fragment length. Provided subread error probabilities are modified according to number of passes...2096 days ago
swgis v2.0 : a seqword genomic island sniffer
swgis v2.0 is the modified version of the seqword genomic island sniffer. this version is specifically optimized for predicting genomic islands in eukaryotic genomes. swgis v2...2025 days ago
SIMBA: a Genome Assembly Project Management System
...Generation Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open source tool, i.e., can be freely downloaded, shared and modified.1997 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...ng reads with approximately 15% sequencing errors, and NextGraph can be used to construct a string graph with corrected reads. It also contains a modified version of minimap2 ...1595 days ago
JASMINE: Jointly Accurate Sv Merging with Intersample Network Edges
...length), type and strand information, and a number of other values. Jasmine represents the set of all SVs across samples as a network, and uses a modified minimum spanning forest algor...686 days ago
