Results for "mouse model"
Top-level pages
"Bioinformatics is a science of biological...hniques such as the three-dimensional modeling of biomolecules and biolog...ng sequence profiles or Hidden Markov Models to perform more sensitive ho...cted with an accuracy above 70 %. 3D models can be obtained most easily...3956 days ago
- Genomics is the study of the genomes of organisms. The field includes intens...of bacteria and archaea.Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the codin...
3951 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation qua...iD reads in colorspace] Repeat-aware modeling and correction of short re...010 PubMedCentral Two-stage Poisson model for testing RNA-seq data. Aue...xt-generation RAD sequencing of a non-model organism. Baxter et al., PLoS...3788 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software...ion under various demographic models. http://users-birc.au.dk/mai...ASYPOP is an individual based model intended to simulate datasets...lGAMETES Genetic Architecture Model Emulator for Testing and Eval...structure-based substitution models http://code.google.com/p/pro...3746 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico...by solvent accessible surface model (Richards' surface) and by molecular surface model (Connolly's surface), all cal...function prediction using 3D models of proteins. ProBiS: http:/...ted ligand docking or in situ modeling. Comparing the shape simil...3753 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for N...P-Seq experiments. Its algorithm uses hidden Markov models (HMM) and Bayesian statistic...iption factors. PICS identifies enriched regions by modeling local concentrations of di...3634 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo...on sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes...of the Vancouver Short Read Analysis Package MACS - Model-based Analysis for ChIP-Seq....3528 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de nov...on sequencer reads, aligned to whole chromosomes of model organism or mammalian genomes...the Vancouver Short Read Analysis Package * MACS - Model-based Analysis for ChIP-Seq....3252 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is f...protein-structure prediction to provide structural models of the binding site. Ligands bound to structures are superimposed onto the model and use to predict the bindin...2211 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Description: uses likelihood-based model for variant calling, starts f...isticallys instead of using ad-hoc modeling; effects are integrated at...: covariance matrix for regression models mtSet Description: C...dquo;; Web application; For human, mouse, zebrafish, pufferfish Input...2918 days ago
