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Vital-IT is a bioinformatics competence center that supports and collaborates with life scientists in Switzerland and beyond. The multi-disciplinary team provides expertise, training...3440 days ago
CoronaVIR: Computational Resources on Novel Coronavirus (SARS-CoV-2 or COVID-19)
...ecules. These are predicted candidates, need to be validated by experimental Researchers, who have appropriate infrastructure. It is an integrated multi-omics repository dedicated to...1119 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka...
2965 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
...graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, inclu...2943 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...ng, such as repeat masking, since it will automatically detect ambiguous mappings. Satsuma has parallelization built-in and is designed to run on multi-core architectures. The run-t...2929 days ago
RCircos: an R package for Circos 2D track plots
...os 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-scale multi-sample genomic research data....2921 days ago
- ...affolding: joining of genome fragments using paired-end and/or mate-pairs reads gap closing Redundans is: fast & lightweight, multi-core support and memory-optim...
2817 days ago
OPERA : Optimal Paired-End Read Assembler
...its basic algorithm (to reduce local errors, improve efficiency etc.) and incorporated features that are important for scaffolding large genomes (multi-library support, better repea...2810 days ago
- ...ired-end reads to achieve an accuracy comparable to other assemblers, this is not a favorable solution.Fermi is designed to be used on a multi-core Linux machine with large...
2810 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...;recombination map has been added for all multi-locus traits. The map positio...teson-)Dobzhansky-Muller incompatibility loci. Multiple haploid or diploid pairs o...the genome and affect individual fitness. Multi-type selection: Individu...2787 days ago
