Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comprehensive and reproducible analysis of chordate genome data. Ensembl computes pairwise and multi...3001 days ago
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RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, repre...6 --max_memory 20G Find assembled transcripts as: 'trinity_out_dir/Trinity.fasta'2977 days ago
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QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multi...2963 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired en...embly based on the error calls. The software requires as input an assembly in FASTA format and paired reads mappe...2963 days ago
YASS :: genomic similarity search tool
...or nucleic (DNA/RNA) sequences in fasta or plain text format (it produce...lignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LA...ts. This genomic search tool uses multiple transition constrained spa...). Main features of YASS are: multiple, possibly overlapping seed...2937 days ago
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