3955 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...This paper describes a 2-dimensional pooling strategy with barcoding to allow use of Illumina sequencing to screen for retrotransposon insertion mutations, and includes a software pack...3788 days ago
Apps for Busy Bioinformatics Researchers !!!
...ring View RSS feeds for journals Query GeneRIF interactions, COSMIC mutations, and CNV data for cell lines....ll lines. A subset of COSMIC containing cell lines can be queried for mutations. Copy Number Variation (CNV)...3550 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...quo;s raw measurements; accommodates de novo mutations, can perform variant calling...d Institute, identification of somatic point mutations in cancer genomes; requires p...Ensembl gene annotation systems; can compare mutations detected in dpSNP or 1000 Gen...2917 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ased) Software (C) http://lava.csail.mit.edu/ MICADo Detection of mutations in targeted third-generation NGS data (can distinguish patients’ specific mutations; algorithm uses k-mers a...2379 days ago
Tools to Predict the Impact of Missense Variants !
...he functional impact of amino acid substitutions in proteins, such as mutations discovered in cancer or missense polymorphisms” LRT“Identify a subset of deleterious mutations that disrupt highly conserved...2212 days ago