Results for "narrow peaks"
Blogs
Calling narrow and broad peaks from ChIP-Seq data
...or detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Se...3196 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longe...quence data Code: $ kmercountexact.sh in=reads.fq khist=histogram.txt peaks=peaks.txt You can examine the hi...2270 days ago
Bookmarks
- I bet, this website will be your best friend in near future. This helps us to explore the existing open source code...des for your analysis work. You can use the left bar options to filtere out or narro...
3915 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantificatio...y. Mass spectra are analyzed in the absence of a reference database (ex: using PEAKS, PepNovo). ProteoClade s...1508 days ago
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Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jimén...over-representation of specific ontology categories among genes near ChIP-seq peaks Next-gen-seq software - a li...3778 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NG...lowing sample code introduces the identification of peaks with the BayesPeak package as...PpeakAnno package provides. batch annotation of the peaks identified from either ChIP-s...3624 days ago
Wire posts
Video
- What is health informatics? In the words of Dr. Noni MacDonald...: "Most of the way I've seen it defined is the int...nce and health care and health systems but I think that's very linear and very narro...
3706 days ago
Tags
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from ChIP-Se...Tags: ChIP-Seq, strand ngs, peak calling, PICS, MACS, broad peaks, narrow peaks
3196 days ago
