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Results for "ncbi"

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  • Jit

    Platanus

    Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data....

    2908 days ago

  • Anjana

    HistoneDB 2.0 – with variants

    ...y affect functional and structural features of nucleosomes. To get started, select a histone type to explore its variants. More at http://www.ncbi.nlm.nih.gov/projects/HistoneD...

    2887 days ago

  • Jit

    CovCal: Coverage / Read Count Calculator

    Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configur...

    2160 days ago

  • Jit

    Kaiju

    ...t sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by comparing it to a...nces. By default, Kaiju uses either the available complete genomes from NCBI RefSeq or the microbial subse...

    2863 days ago

  • Neelam Jha

    MEGAN6

    ...hensive toolbox for interactively analyzing microbiome data. All the interactive tools you need in one application. Taxonomic analysis using the NCBI taxonomy or a customized taxo...

    2835 days ago

  • Abhimanyu Singh

    CrossMap

    ...is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (G...

    2793 days ago

  • Poonam Mahapatra

    Ka, Ks and Ka/Ks calculations

    ...been well annotated.  Look for KaKs calculation: https://github.com/fumba/kaks-calculator http://longlab.uchicago.edu/?q=gKaKs http://www.ncbi.nlm.nih.gov/pubmed/23314322...

    2800 days ago

  • Jit

    BRAKER: pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

    ...omplementary strengths of GeneMark-ET and AUGUSTUS provided motivation for designing a new combined tool for automatic gene prediction. http://www.ncbi.nlm.nih.gov/pubmed/26559507

    1945 days ago

  • Jit

    PHYMMBL

    Metagenomics sequencing projects collect samples of DNA from uncharacterized environments that may contain hundreds or even thousands of species. One of the main chall...

    2758 days ago

  • Anjana

    Entrez Direct: E-utilities on the UNIX Command Line

    Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a...

    2749 days ago

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