NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It use...ect-then-assemble" strategy similar to canu, but requires significantly less computing resources and storages. After...1595 days ago
QuorUM: An Error Corrector for Illumina Reads
We produce trimmed and error-corrected reads that result in assemblies with longer contig...s we use. QuorUM is efficiently implemented making use of current multi-core computing architectures and it is suita...1564 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spen...been enthused about using k-mer based similarity measures and computing and searching k-mer-based ske...996 days ago