Results for "next-generation"
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Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (a...2918 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools,...2918 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. The...
2894 days ago
- ...erami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam...ols is a popular open-source tool used in next-generation sequence analysis. This prime...tools, and is geared towards those new to next-generation sequence analysis. The primer...
2885 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program,...
2831 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/lon...2807 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a dramatic shift in the w...
2811 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...We have organized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results...2809 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such bi...
2765 days ago
- ...of simulation tools to generate synthetic next-generation sequencing reads. ART simulat...mate-pair reads of three major commercial next-generation sequencing platforms: Illumin...enchmark a variety of method or tools for next-generation sequencing data analysis, inc...
2752 days ago
